Maps of 1001 Genomes Project - Arabidopsis thaliana genomes

Interactive ancestry maps based on 1001 Genomes project:

• Genome-based map coloured by country (GTM + t-SNE + PCA + world map)
• Genome-based map coloured by admixture group (GTM + t-SNE + PCA + world map)*

• *Tutorial for reproducing these maps: https://github.com/hagax8/arabidopsis_viz/
• *** The maps are based on 1001 Genomes project data
• **** GTM = Generative topographic mapping, t-SNE = t-distributed stochastic neighbor embedding, PCA = principal component analysis
• ***** Admixture group annotations were downloaded from the 1001 Genomes Project website